IL_6WDR_040
3D structure
- PDB id
- 6WDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subunit joining exposes nascent pre-40S rRNA for processing and quality control
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- 6WDR|1|2|U|1040
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WDR_040 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.4957
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
6WDR|1|2|G|997
6WDR|1|2|A|998
6WDR|1|2|A|999
6WDR|1|2|A|1000
6WDR|1|2|A|1001
6WDR|1|2|A|1002
6WDR|1|2|A|1003
6WDR|1|2|U|1004
6WDR|1|2|U|1005
*
6WDR|1|2|A|1037
6WDR|1|2|U|1038
6WDR|1|2|A|1039
6WDR|1|2|U|1040
6WDR|1|2|U|1041
6WDR|1|2|A|1042
6WDR|1|2|G|1043
6WDR|1|2|C|1044
Current chains
- Chain 2
- 20S ribosomal RNA
Nearby chains
- Chain E
- 40S ribosomal protein S4-A
- Chain J
- 40S ribosomal protein S9-A
- Chain L
- 40S ribosomal protein S11-A
- Chain W
- 40S ribosomal protein S22-A
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