IL_6WDR_050

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUC*GGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_050 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2414

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6WDR|1|2|G|1270
6WDR|1|2|G|1271
6WDR|1|2|U|1272
6WDR|1|2|C|1273
*
6WDR|1|2|G|1278
6WDR|1|2|G|1279
6WDR|1|2|A|1280
6WDR|1|2|U|1281

Current chains

Chain 2

20S ribosomal RNA

Nearby chains