IL_6WDR_073

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

6WDR|1|2|U|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_073 not in the Motif Atlas

Homologous match to IL_8C3A_424

Geometric discrepancy: 0.4369

The information below is about IL_8C3A_424

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

94

Unit IDs

6WDR|1|2|G|820
6WDR|1|2|U|821
6WDR|1|2|C|822
*
6WDR|1|2|G|849
6WDR|1|2|C|850

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain D

40S ribosomal protein S3

Chain e

40S ribosomal protein S30-A