IL_6WDR_080

3D structure

PDB id

6WDR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subunit joining exposes nascent pre-40S rRNA for processing and quality control

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCUCA*UUUGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WDR_080 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.5986

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6WDR|1|2|C|1826
6WDR|1|2|C|1827
6WDR|1|2|U|1828
6WDR|1|2|C|1829
6WDR|1|2|A|1830
*
6WDR|1|2|U|1875
6WDR|1|2|U|1876
6WDR|1|2|U|1877
6WDR|1|2|G|1878
6WDR|1|2|G|1879

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S6-A

Chain I

40S ribosomal protein S8-A