IL_6WLT_157

3D structure

PDB id

6WLT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Apo V. cholerae glycine riboswitch models, 4.8 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAA*UC

Length

5 nucleotides

Bulged bases

6WLT|16|A|A|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLT_157 not in the Motif Atlas

Geometric match to IL_3OXE_001

Geometric discrepancy: 0.0725

The information below is about IL_3OXE_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

6WLT|16|A|G|150
6WLT|16|A|A|151
6WLT|16|A|A|152
*
6WLT|16|A|U|165
6WLT|16|A|C|166

Current chains

Chain A

RNA (231-MER)

Nearby chains