IL_6WLU_201

3D structure

PDB id

6WLU (explore in PDB, NAKB, or RNA 3D Hub)

Description

V. cholerae glycine riboswitch with glycine models, 5.7 Angstrom resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUUAG*CAACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WLU_201 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3751

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.5

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6WLU|3|A|C|92
6WLU|3|A|U|93
6WLU|3|A|U|94
6WLU|3|A|A|95
6WLU|3|A|G|96
*
6WLU|3|A|C|108
6WLU|3|A|A|109
6WLU|3|A|A|110
6WLU|3|A|C|111
6WLU|3|A|G|112

Current chains

Chain A

RNA (231-MER)

Nearby chains