IL_6WNT_009

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_009 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.3299

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6WNT|1|4|C|274
6WNT|1|4|C|275
6WNT|1|4|U|276
6WNT|1|4|G|277
6WNT|1|4|A|278
6WNT|1|4|A|279
6WNT|1|4|U|280
6WNT|1|4|C|281
*
6WNT|1|4|G|359
6WNT|1|4|U|360
6WNT|1|4|G|361
6WNT|1|4|A|362
6WNT|1|4|G|363

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains