IL_6WNT_011
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 6WNT|1|4|A|504, 6WNT|1|4|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNT_011 not in the Motif Atlas
- Geometric match to IL_5J7L_255
- Geometric discrepancy: 0.0966
- The information below is about IL_5J7L_255
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_81516.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 6
Unit IDs
6WNT|1|4|G|481
6WNT|1|4|A|482
6WNT|1|4|A|483
6WNT|1|4|C|484
*
6WNT|1|4|G|496
6WNT|1|4|A|497
6WNT|1|4|G|498
6WNT|1|4|U|499
6WNT|1|4|G|500
6WNT|1|4|A|501
6WNT|1|4|A|502
6WNT|1|4|A|503
6WNT|1|4|A|504
6WNT|1|4|A|505
6WNT|1|4|G|506
6WNT|1|4|A|507
6WNT|1|4|A|508
6WNT|1|4|C|509
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain s
- 50S ribosomal protein L22
- Chain u
- 50S ribosomal protein L24
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