IL_6WNT_026

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CUGC

Length

7 nucleotides

Bulged bases

6WNT|1|4|G|914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_026 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2517

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

6WNT|1|4|G|862
6WNT|1|4|A|863
6WNT|1|4|G|864
*
6WNT|1|4|C|912
6WNT|1|4|U|913
6WNT|1|4|G|914
6WNT|1|4|C|915

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L27