IL_6WNT_027

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_027 not in the Motif Atlas

Geometric match to IL_4V9F_051

Geometric discrepancy: 0.152

The information below is about IL_4V9F_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.12

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

6WNT|1|4|G|864
6WNT|1|4|C|865
6WNT|1|4|A|866
6WNT|1|4|C|867
6WNT|1|4|U|868
*
6WNT|1|4|A|909
6WNT|1|4|A|910
6WNT|1|4|A|911
6WNT|1|4|C|912

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains