IL_6WNT_030

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*UUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_030 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3525

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

6WNT|1|4|G|879
6WNT|1|4|G|880
6WNT|1|4|G|881
6WNT|1|4|G|882
*
6WNT|1|4|U|894
6WNT|1|4|U|895
6WNT|1|4|A|896
6WNT|1|4|C|897
6WNT|1|4|C|898

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains