IL_6WNT_047

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

6WNT|1|4|A|1333

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_047 not in the Motif Atlas

Geometric match to IL_5J7L_287

Geometric discrepancy: 0.1344

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

6WNT|1|4|G|1330
6WNT|1|4|U|1331
6WNT|1|4|A|1332
6WNT|1|4|A|1333
6WNT|1|4|G|1334
*
6WNT|1|4|U|1368
6WNT|1|4|A|1369
6WNT|1|4|U|1370
6WNT|1|4|C|1371

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15