IL_6WNT_049
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNT_049 not in the Motif Atlas
- Geometric match to IL_5J7L_289
- Geometric discrepancy: 0.0817
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6WNT|1|4|A|1390
6WNT|1|4|U|1391
6WNT|1|4|A|1392
6WNT|1|4|A|1393
6WNT|1|4|G|1394
6WNT|1|4|U|1395
6WNT|1|4|A|1396
6WNT|1|4|A|1397
*
6WNT|1|4|U|2139
6WNT|1|4|G|2140
6WNT|1|4|A|2141
6WNT|1|4|A|2142
6WNT|1|4|A|2143
6WNT|1|4|U|2144
6WNT|1|4|U|2145
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain d
- 50S ribosomal protein L4
- Chain s
- 50S ribosomal protein L22
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