IL_6WNT_054

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UG*CAUCAG

Length

8 nucleotides

Bulged bases

6WNT|1|4|U|1712

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_054 not in the Motif Atlas

Geometric match to IL_5J7L_294

Geometric discrepancy: 0.2965

The information below is about IL_5J7L_294

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87211.1

Basepair signature

cWW-cSW-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6WNT|1|4|U|1543
6WNT|1|4|G|1544
*
6WNT|1|4|C|1710
6WNT|1|4|A|1711
6WNT|1|4|U|1712
6WNT|1|4|C|1713
6WNT|1|4|A|1714
6WNT|1|4|G|1715

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains