IL_6WNT_055

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

6WNT|1|4|A|1548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_055 not in the Motif Atlas

Geometric match to IL_5J7L_295

Geometric discrepancy: 0.1194

The information below is about IL_5J7L_295

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6WNT|1|4|C|1545
6WNT|1|4|G|1546
6WNT|1|4|A|1547
6WNT|1|4|A|1548
6WNT|1|4|G|1549
*
6WNT|1|4|C|1705
6WNT|1|4|U|1706
6WNT|1|4|A|1707
6WNT|1|4|A|1708
6WNT|1|4|G|1709

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains