IL_6WNT_065

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_065 not in the Motif Atlas

Geometric match to IL_4WF9_063

Geometric discrepancy: 0.1598

The information below is about IL_4WF9_063

Detailed Annotation

Isolated tWW turn

Broad Annotation

No text annotation

Motif group

IL_10432.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

10

Unit IDs

6WNT|1|4|G|1791
6WNT|1|4|A|1792
6WNT|1|4|A|1793
*
6WNT|1|4|U|2123
6WNT|1|4|C|2124
6WNT|1|4|C|2125

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L3

Chain k

50S ribosomal protein L14

Chain p

50S ribosomal protein L19