IL_6WNT_068

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6WNT|1|4|G|1827

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_068 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0911

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6WNT|1|4|C|1814
6WNT|1|4|G|1815
6WNT|1|4|U|1816
6WNT|1|4|A|1817
6WNT|1|4|A|1818
6WNT|1|4|C|1819
*
6WNT|1|4|G|1824
6WNT|1|4|G|1825
6WNT|1|4|A|1826
6WNT|1|4|G|1827
6WNT|1|4|A|1828
6WNT|1|4|A|1829
6WNT|1|4|G|1830

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2