IL_6WNT_069

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

6WNT|1|4|U|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_069 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.1509

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WNT|1|4|U|1840
6WNT|1|4|A|1841
6WNT|1|4|U|1842
6WNT|1|4|G|1843
6WNT|1|4|U|1844
6WNT|1|4|A|1845
6WNT|1|4|G|1846
*
6WNT|1|4|U|1870
6WNT|1|4|G|1871
6WNT|1|4|A|1872
6WNT|1|4|A|1873
6WNT|1|4|A|1874

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains