IL_6WNT_075
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAG*CC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNT_075 not in the Motif Atlas
- Geometric match to IL_4V9F_068
- Geometric discrepancy: 0.2657
- The information below is about IL_4V9F_068
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_73108.2
- Basepair signature
- cWW-cWS-cSH-cWW
- Number of instances in this motif group
- 23
Unit IDs
6WNT|1|4|G|1974
6WNT|1|4|A|1975
6WNT|1|4|A|1976
6WNT|1|4|G|1977
*
6WNT|1|4|C|2021
6WNT|1|4|C|2022
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain b
- 50S ribosomal protein L2
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