IL_6WNT_088

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_088 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.0971

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

6WNT|1|4|C|2478
6WNT|1|4|G|2479
6WNT|1|4|A|2480
6WNT|1|4|G|2481
*
6WNT|1|4|C|2492
6WNT|1|4|G|2493
6WNT|1|4|A|2494
6WNT|1|4|G|2495

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L35

Chain w

50S ribosomal protein L27