IL_6WNT_090

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_090 not in the Motif Atlas

Geometric match to IL_5J7L_274

Geometric discrepancy: 0.1806

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6WNT|1|4|C|2594
6WNT|1|4|C|2595
6WNT|1|4|A|2596
6WNT|1|4|A|2597
6WNT|1|4|G|2598
*
6WNT|1|4|C|2608
6WNT|1|4|G|2609
6WNT|1|4|A|2610
6WNT|1|4|C|2611
6WNT|1|4|G|2612

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L36