IL_6WNT_102

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAAG*CGUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNT_102 not in the Motif Atlas

Geometric match to IL_5J7L_351

Geometric discrepancy: 0.132

The information below is about IL_5J7L_351

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_29471.1

Basepair signature

cWW-cWW-L-tHS-L-cWW

Number of instances in this motif group

1

Unit IDs

6WNT|1|4|C|2934
6WNT|1|4|U|2935
6WNT|1|4|G|2936
6WNT|1|4|A|2937
6WNT|1|4|A|2938
6WNT|1|4|G|2939
*
6WNT|1|4|C|3017
6WNT|1|4|G|3018
6WNT|1|4|U|3019
6WNT|1|4|G|3020

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L32

Chain c

50S ribosomal protein L3

Chain s

50S ribosomal protein L22