IL_6WNT_109
3D structure
- PDB id
- 6WNT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit without free 5S rRNA and perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAACUAGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 6WNT|1|4|G|2120
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNT_109 not in the Motif Atlas
- Geometric match to IL_4WF9_117
- Geometric discrepancy: 0.0758
- The information below is about IL_4WF9_117
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80252.1
- Basepair signature
- cWW-tSH-cWW-tHW-R-L-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
6WNT|1|4|G|1794
6WNT|1|4|G|1795
6WNT|1|4|A|1796
6WNT|1|4|A|1797
6WNT|1|4|C|1798
6WNT|1|4|U|1799
6WNT|1|4|A|1800
6WNT|1|4|G|1801
6WNT|1|4|G|1802
*
6WNT|1|4|C|2118
6WNT|1|4|U|2119
6WNT|1|4|G|2120
6WNT|1|4|U|2121
6WNT|1|4|C|2122
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain c
- 50S ribosomal protein L3
- Chain k
- 50S ribosomal protein L14
Coloring options: