IL_6WNT_111

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUGUGUAGGAUAGG*CCCUU

Length

19 nucleotides

Bulged bases

6WNT|1|4|U|2239, 6WNT|1|4|U|2246, 6WNT|1|4|C|2306, 6WNT|1|4|C|2307

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNT|1|4|A|2236
6WNT|1|4|U|2237
6WNT|1|4|G|2238
6WNT|1|4|U|2239
6WNT|1|4|G|2240
6WNT|1|4|U|2241
6WNT|1|4|A|2242
6WNT|1|4|G|2243
6WNT|1|4|G|2244
6WNT|1|4|A|2245
6WNT|1|4|U|2246
6WNT|1|4|A|2247
6WNT|1|4|G|2248
6WNT|1|4|G|2249
*
6WNT|1|4|C|2305
6WNT|1|4|C|2306
6WNT|1|4|C|2307
6WNT|1|4|U|2308
6WNT|1|4|U|2309

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1