IL_6WNT_112

3D structure

PDB id

6WNT (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit without free 5S rRNA and perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAGGCUUUGAAGU*AUGGAGCCGACCUUGAAAUAC

Length

35 nucleotides

Bulged bases

6WNT|1|4|A|2254, 6WNT|1|4|U|2260, 6WNT|1|4|G|2296, 6WNT|1|4|A|2297, 6WNT|1|4|U|2300

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6WNT|1|4|G|2252
6WNT|1|4|G|2253
6WNT|1|4|A|2254
6WNT|1|4|G|2255
6WNT|1|4|G|2256
6WNT|1|4|C|2257
6WNT|1|4|U|2258
6WNT|1|4|U|2259
6WNT|1|4|U|2260
6WNT|1|4|G|2261
6WNT|1|4|A|2262
6WNT|1|4|A|2263
6WNT|1|4|G|2264
6WNT|1|4|U|2265
*
6WNT|1|4|A|2282
6WNT|1|4|U|2283
6WNT|1|4|G|2284
6WNT|1|4|G|2285
6WNT|1|4|A|2286
6WNT|1|4|G|2287
6WNT|1|4|C|2288
6WNT|1|4|C|2289
6WNT|1|4|G|2290
6WNT|1|4|A|2291
6WNT|1|4|C|2292
6WNT|1|4|C|2293
6WNT|1|4|U|2294
6WNT|1|4|U|2295
6WNT|1|4|G|2296
6WNT|1|4|A|2297
6WNT|1|4|A|2298
6WNT|1|4|A|2299
6WNT|1|4|U|2300
6WNT|1|4|A|2301
6WNT|1|4|C|2302

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain a

50S ribosomal protein L1