3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GGAUAAC*GCUAAUAC
Length
15 nucleotides
Bulged bases
6WNV|1|3|U|173
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WNV_012 not in the Motif Atlas
Homologous match to IL_5J7L_012
Geometric discrepancy: 0.1633
The information below is about IL_5J7L_012
Detailed Annotation
tWH-tWH-tHW-tHW
Broad Annotation
No text annotation
Motif group
IL_80604.6
Basepair signature
cWW-cWW-tWH-tWH-tHW-tHW-cWW
Number of instances in this motif group
3

Unit IDs

6WNV|1|3|G|147
6WNV|1|3|G|148
6WNV|1|3|A|149
6WNV|1|3|U|150
6WNV|1|3|A|151
6WNV|1|3|A|152
6WNV|1|3|C|153
*
6WNV|1|3|G|168
6WNV|1|3|C|169
6WNV|1|3|U|170
6WNV|1|3|A|171
6WNV|1|3|A|172
6WNV|1|3|U|173
6WNV|1|3|A|174
6WNV|1|3|C|175

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Y
30S ribosomal protein S20

Coloring options:


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