IL_6WNV_057

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_057 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.2444

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|3|C|1303
6WNV|1|3|G|1304
6WNV|1|3|G|1305
6WNV|1|3|A|1306
6WNV|1|3|U|1307
6WNV|1|3|U|1308
*
6WNV|1|3|A|1329
6WNV|1|3|U|1330
6WNV|1|3|G|1331
6WNV|1|3|A|1332
6WNV|1|3|A|1333
6WNV|1|3|G|1334

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain R

30S ribosomal protein S13