IL_6WNV_082

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WNV|1|4|G|801, 6WNV|1|4|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_082 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1068

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|G|674
6WNV|1|4|A|675
6WNV|1|4|A|676
6WNV|1|4|A|677
6WNV|1|4|C|678
*
6WNV|1|4|G|799
6WNV|1|4|A|800
6WNV|1|4|G|801
6WNV|1|4|A|802
6WNV|1|4|U|803
6WNV|1|4|A|804
6WNV|1|4|G|805
6WNV|1|4|C|806

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15