IL_6WNV_091

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGGGUAG*CGAAUAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_091 not in the Motif Atlas

Geometric match to IL_5J7L_270

Geometric discrepancy: 0.108

The information below is about IL_5J7L_270

Detailed Annotation

7x7 Sarcin-Ricin with intercalated A; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_29198.2

Basepair signature

cWW-cWW-L-R-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

6WNV|1|4|G|856
6WNV|1|4|G|857
6WNV|1|4|G|858
6WNV|1|4|G|859
6WNV|1|4|U|860
6WNV|1|4|A|861
6WNV|1|4|G|862
*
6WNV|1|4|C|915
6WNV|1|4|G|916
6WNV|1|4|A|917
6WNV|1|4|A|918
6WNV|1|4|U|919
6WNV|1|4|A|920
6WNV|1|4|C|921

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain w

50S ribosomal protein L27

Chain z

50S ribosomal protein L30