IL_6WNV_093

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCACU*AAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_093 not in the Motif Atlas

Geometric match to IL_5J7L_272

Geometric discrepancy: 0.1189

The information below is about IL_5J7L_272

Detailed Annotation

C-loop with bulged stacked A's

Broad Annotation

C-loop

Motif group

IL_26222.2

Basepair signature

cWW-cWS-cSH-tWH-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6WNV|1|4|G|864
6WNV|1|4|C|865
6WNV|1|4|A|866
6WNV|1|4|C|867
6WNV|1|4|U|868
*
6WNV|1|4|A|909
6WNV|1|4|A|910
6WNV|1|4|A|911
6WNV|1|4|C|912

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains