IL_6WNV_099

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_099 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1147

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6WNV|1|4|U|1004
6WNV|1|4|C|1005
6WNV|1|4|C|1006
6WNV|1|4|C|1007
6WNV|1|4|A|1008
6WNV|1|4|A|1009
6WNV|1|4|A|1010
6WNV|1|4|G|1011
*
6WNV|1|4|C|1278
6WNV|1|4|A|1279

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain j

50S ribosomal protein L13

Chain q

50S ribosomal protein L20