IL_6WNV_102

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAGAGUAG*CGAUGGUAG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_102 not in the Motif Atlas

Geometric match to IL_5J7L_359

Geometric discrepancy: 0.1349

The information below is about IL_5J7L_359

Detailed Annotation

Bacterial 5S Loop E

Broad Annotation

Loop E

Motif group

IL_56455.6

Basepair signature

cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|C|1039
6WNV|1|4|G|1040
6WNV|1|4|A|1041
6WNV|1|4|G|1042
6WNV|1|4|A|1043
6WNV|1|4|G|1044
6WNV|1|4|U|1045
6WNV|1|4|A|1046
6WNV|1|4|G|1047
*
6WNV|1|4|C|1137
6WNV|1|4|G|1138
6WNV|1|4|A|1139
6WNV|1|4|U|1140
6WNV|1|4|G|1141
6WNV|1|4|G|1142
6WNV|1|4|U|1143
6WNV|1|4|A|1144
6WNV|1|4|G|1145

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain v

50S ribosomal protein L25

Chain z

50S ribosomal protein L30