IL_6WNV_104
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_104 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.1618
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
6WNV|1|4|G|1089
6WNV|1|4|G|1090
6WNV|1|4|U|1091
6WNV|1|4|C|1092
6WNV|1|4|C|1093
6WNV|1|4|C|1094
*
6WNV|1|4|G|1122
6WNV|1|4|A|1123
6WNV|1|4|A|1124
6WNV|1|4|A|1125
6WNV|1|4|C|1126
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain e
- 50S ribosomal protein L5
- Chain o
- 50S ribosomal protein L18
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