IL_6WNV_106

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_106 not in the Motif Atlas

Homologous match to IL_5J7L_358

Geometric discrepancy: 0.235

The information below is about IL_5J7L_358

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.11

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

9

Unit IDs

6WNV|1|4|A|1100
6WNV|1|4|C|1101
6WNV|1|4|C|1102
6WNV|1|4|C|1103
6WNV|1|4|C|1104
*
6WNV|1|4|G|1110
6WNV|1|4|A|1111
6WNV|1|4|A|1112
6WNV|1|4|C|1113
6WNV|1|4|U|1114

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L31

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18