IL_6WNV_109
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 6WNV|1|4|A|1174
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_109 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.3258
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.3
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6WNV|1|4|C|1171
6WNV|1|4|C|1172
6WNV|1|4|C|1173
6WNV|1|4|A|1174
6WNV|1|4|G|1175
6WNV|1|4|A|1176
6WNV|1|4|C|1177
6WNV|1|4|A|1178
6WNV|1|4|G|1179
*
6WNV|1|4|U|1236
6WNV|1|4|C|1237
6WNV|1|4|G|1238
6WNV|1|4|A|1239
6WNV|1|4|G|1240
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain h
- 50S ribosomal protein L10
Coloring options: