IL_6WNV_111

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

6WNV|1|4|G|1376

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_111 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.1466

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6WNV|1|4|C|1324
6WNV|1|4|G|1325
6WNV|1|4|U|1326
*
6WNV|1|4|A|1375
6WNV|1|4|G|1376
6WNV|1|4|U|1377
6WNV|1|4|G|1378

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15

Chain q

50S ribosomal protein L20