IL_6WNV_113

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

6WNV|1|4|C|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_113 not in the Motif Atlas

Geometric match to IL_5J7L_288

Geometric discrepancy: 0.0994

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

6WNV|1|4|C|1336
6WNV|1|4|U|1337
6WNV|1|4|G|1338
6WNV|1|4|C|1339
6WNV|1|4|G|1340
6WNV|1|4|A|1341
6WNV|1|4|A|1342
6WNV|1|4|G|1343
*
6WNV|1|4|U|1362
6WNV|1|4|G|1363
6WNV|1|4|G|1364
6WNV|1|4|A|1365
6WNV|1|4|G|1366

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain q

50S ribosomal protein L20