IL_6WNV_116

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6WNV|1|4|G|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_116 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1346

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

6WNV|1|4|C|1447
6WNV|1|4|C|1448
6WNV|1|4|A|1449
6WNV|1|4|A|1450
6WNV|1|4|C|1451
*
6WNV|1|4|G|1459
6WNV|1|4|G|1460
6WNV|1|4|G|1461

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain s

50S ribosomal protein L22

Chain t

50S ribosomal protein L23