IL_6WNV_117

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_117 not in the Motif Atlas

Geometric match to IL_5J7L_292

Geometric discrepancy: 0.0972

The information below is about IL_5J7L_292

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WNV|1|4|C|1479
6WNV|1|4|U|1480
6WNV|1|4|A|1481
6WNV|1|4|A|1482
6WNV|1|4|G|1483
*
6WNV|1|4|C|1504
6WNV|1|4|G|1505
6WNV|1|4|A|1506
6WNV|1|4|U|1507
6WNV|1|4|G|1508

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2