IL_6WNV_121

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

6WNV|1|4|U|1687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_121 not in the Motif Atlas

Geometric match to IL_5J7L_296

Geometric discrepancy: 0.122

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6WNV|1|4|G|1560
6WNV|1|4|A|1561
6WNV|1|4|A|1562
6WNV|1|4|G|1563
*
6WNV|1|4|C|1685
6WNV|1|4|C|1686
6WNV|1|4|U|1687
6WNV|1|4|G|1688
6WNV|1|4|C|1689

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains