IL_6WNV_122

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUAU*AAAUG

Length

9 nucleotides

Bulged bases

6WNV|1|4|U|1682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_122 not in the Motif Atlas

Geometric match to IL_5J7L_297

Geometric discrepancy: 0.1113

The information below is about IL_5J7L_297

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6WNV|1|4|C|1565
6WNV|1|4|U|1566
6WNV|1|4|A|1567
6WNV|1|4|U|1568
*
6WNV|1|4|A|1679
6WNV|1|4|A|1680
6WNV|1|4|A|1681
6WNV|1|4|U|1682
6WNV|1|4|G|1683

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains