IL_6WNV_124

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

6WNV|1|4|U|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_124 not in the Motif Atlas

Geometric match to IL_5J7L_299

Geometric discrepancy: 0.0897

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

6WNV|1|4|U|1596
6WNV|1|4|A|1597
6WNV|1|4|A|1598
6WNV|1|4|G|1599
*
6WNV|1|4|U|1648
6WNV|1|4|G|1649
6WNV|1|4|A|1650
6WNV|1|4|U|1651
6WNV|1|4|G|1652

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains