IL_6WNV_162
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUAGUAC*GGACCG
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_162 not in the Motif Atlas
- Geometric match to IL_7A0S_094
- Geometric discrepancy: 0.1367
- The information below is about IL_7A0S_094
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_16458.4
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6WNV|1|4|C|2780
6WNV|1|4|U|2781
6WNV|1|4|A|2782
6WNV|1|4|G|2783
6WNV|1|4|U|2784
6WNV|1|4|A|2785
6WNV|1|4|C|2786
*
6WNV|1|4|G|2791
6WNV|1|4|G|2792
6WNV|1|4|A|2793
6WNV|1|4|C|2794
6WNV|1|4|C|2795
6WNV|1|4|G|2796
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain f
- 50S ribosomal protein L6
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