IL_6WNV_166
3D structure
- PDB id
- 6WNV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome without free 5S rRNA and with a perturbed PTC
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 6WNV|1|4|A|2893
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNV_166 not in the Motif Atlas
- Geometric match to IL_5J7L_350
- Geometric discrepancy: 0.0914
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
6WNV|1|4|G|2865
6WNV|1|4|A|2866
6WNV|1|4|U|2867
6WNV|1|4|A|2868
6WNV|1|4|A|2869
6WNV|1|4|G|2870
*
6WNV|1|4|C|2890
6WNV|1|4|G|2891
6WNV|1|4|A|2892
6WNV|1|4|A|2893
6WNV|1|4|A|2894
6WNV|1|4|C|2895
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain F
- 50S ribosomal protein L36
- Chain f
- 50S ribosomal protein L6
- Chain j
- 50S ribosomal protein L13
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