3D structure

PDB id
6WNV (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome without free 5S rRNA and with a perturbed PTC
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GAUAAG*CGAAAC
Length
12 nucleotides
Bulged bases
6WNV|1|4|A|2893
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WNV_166 not in the Motif Atlas
Geometric match to IL_5J7L_350
Geometric discrepancy: 0.0914
The information below is about IL_5J7L_350
Detailed Annotation
UAA/GAN with extra cWW
Broad Annotation
No text annotation
Motif group
IL_49767.8
Basepair signature
cWW-cWW-tWH-L-tHS-cWW
Number of instances in this motif group
6

Unit IDs

6WNV|1|4|G|2865
6WNV|1|4|A|2866
6WNV|1|4|U|2867
6WNV|1|4|A|2868
6WNV|1|4|A|2869
6WNV|1|4|G|2870
*
6WNV|1|4|C|2890
6WNV|1|4|G|2891
6WNV|1|4|A|2892
6WNV|1|4|A|2893
6WNV|1|4|A|2894
6WNV|1|4|C|2895

Current chains

Chain 4
23s-5s joint ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L36
Chain f
50S ribosomal protein L6
Chain j
50S ribosomal protein L13

Coloring options:


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