IL_6WNV_170

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAAG*UUGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_170 not in the Motif Atlas

Geometric match to IL_7RQB_110

Geometric discrepancy: 0.1227

The information below is about IL_7RQB_110

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_83162.5

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WNV|1|4|U|2975
6WNV|1|4|G|2976
6WNV|1|4|U|2977
6WNV|1|4|A|2978
6WNV|1|4|A|2979
6WNV|1|4|G|2980
*
6WNV|1|4|U|2993
6WNV|1|4|U|2994
6WNV|1|4|G|2995
6WNV|1|4|A|2996
6WNV|1|4|G|2997

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L17

Chain p

50S ribosomal protein L19