IL_6WNV_180

3D structure

PDB id

6WNV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome without free 5S rRNA and with a perturbed PTC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGUAG*UGAGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNV_180 not in the Motif Atlas

Geometric match to IL_5J7L_300

Geometric discrepancy: 0.1152

The information below is about IL_5J7L_300

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_38862.4

Basepair signature

cWW-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6WNV|1|4|U|1602
6WNV|1|4|G|1603
6WNV|1|4|U|1604
6WNV|1|4|A|1605
6WNV|1|4|G|1606
*
6WNV|1|4|U|1641
6WNV|1|4|G|1642
6WNV|1|4|A|1643
6WNV|1|4|G|1644
6WNV|1|4|G|1645

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains