3D structure

PDB id
6WNW (explore in PDB, NAKB, or RNA 3D Hub)
Description
Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAUUAG*CGACGAUC
Length
14 nucleotides
Bulged bases
6WNW|1|3|U|244, 6WNW|1|3|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6WNW_014 not in the Motif Atlas
Homologous match to IL_5J7L_014
Geometric discrepancy: 0.1129
The information below is about IL_5J7L_014
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.3
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
5

Unit IDs

6WNW|1|3|G|242
6WNW|1|3|A|243
6WNW|1|3|U|244
6WNW|1|3|U|245
6WNW|1|3|A|246
6WNW|1|3|G|247
*
6WNW|1|3|C|277
6WNW|1|3|G|278
6WNW|1|3|A|279
6WNW|1|3|C|280
6WNW|1|3|G|281
6WNW|1|3|A|282
6WNW|1|3|U|283
6WNW|1|3|C|284

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain Q
30S ribosomal protein S12
Chain V
30S ribosomal protein S17

Coloring options:


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