IL_6WNW_082

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6WNW|1|4|G|801, 6WNW|1|4|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_082 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0901

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6WNW|1|4|G|674
6WNW|1|4|A|675
6WNW|1|4|A|676
6WNW|1|4|A|677
6WNW|1|4|C|678
*
6WNW|1|4|G|799
6WNW|1|4|A|800
6WNW|1|4|G|801
6WNW|1|4|A|802
6WNW|1|4|U|803
6WNW|1|4|A|804
6WNW|1|4|G|805
6WNW|1|4|C|806

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain l

50S ribosomal protein L15