IL_6WNW_103
3D structure
- PDB id
- 6WNW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGAGAGUAG*CGAUGGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6WNW_103 not in the Motif Atlas
- Geometric match to IL_5J7L_359
- Geometric discrepancy: 0.0763
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
6WNW|1|4|C|1039
6WNW|1|4|G|1040
6WNW|1|4|A|1041
6WNW|1|4|G|1042
6WNW|1|4|A|1043
6WNW|1|4|G|1044
6WNW|1|4|U|1045
6WNW|1|4|A|1046
6WNW|1|4|G|1047
*
6WNW|1|4|C|1137
6WNW|1|4|G|1138
6WNW|1|4|A|1139
6WNW|1|4|U|1140
6WNW|1|4|G|1141
6WNW|1|4|G|1142
6WNW|1|4|U|1143
6WNW|1|4|A|1144
6WNW|1|4|G|1145
Current chains
- Chain 4
- 23s-5s joint ribosomal RNA
Nearby chains
- Chain m
- 50S ribosomal protein L16
- Chain v
- 50S ribosomal protein L25
Coloring options: