IL_6WNW_105

3D structure

PDB id

6WNW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUCCC*GAAAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6WNW_105 not in the Motif Atlas

Homologous match to IL_5J7L_356

Geometric discrepancy: 0.1248

The information below is about IL_5J7L_356

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18472.4

Basepair signature

cWW-tSW-R-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6WNW|1|4|G|1089
6WNW|1|4|G|1090
6WNW|1|4|U|1091
6WNW|1|4|C|1092
6WNW|1|4|C|1093
6WNW|1|4|C|1094
*
6WNW|1|4|G|1122
6WNW|1|4|A|1123
6WNW|1|4|A|1124
6WNW|1|4|A|1125
6WNW|1|4|C|1126

Current chains

Chain 4

23s-5s joint ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L5

Chain o

50S ribosomal protein L18